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      <image:title>Work - A Study of Location-Based Mutation Patterns in the SARS-CoV-2 Genome</image:title>
      <image:caption>A table of information about SNPs identified in our dataset of 1241 SARS-CoV-2 sequences. Loci with matching distributions and identical time plots by month are highlighted in the same color. For instance, we observed the same distribution of ancestral and derived alleles at loci 18998 and 29540, and also observed identical time plots by month for those loci.</image:caption>
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      <image:caption>Sample of allele frequencies by month plotted from March to October 2020 for pairs of variants at a given SNP. Each data point represents the total frequency of ancestral or derived alleles for the corresponding month. While the majority of the plots appear to show some level of fixation (Loci 619, 1917, 3037, 4113, 8078, 8782, 10851, 11083, 14408, 14912, 17247, 20005, 20755, 23403, 26144, and 28144), we identify an interesting pattern at three contiguous loci: 28881, 28882, and 28883.</image:caption>
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      <image:caption>Heatmap of derived allele frequencies by county. All SNP loci are represented on the x-axis, all counties are represented on the y-axis, and each county-locus pair is colored by the frequency of the derived allele at that locus and in that county. This visualization allows us to compare SNP distributions across counties by identifying similar bands in the heatmap. For instance, we observe a pattern of banding that occurs in the data from Manhattan, the Bronx, Brooklyn, Queens, and New York. Likewise, similar banding can be observed for data from Albany and Montogomery.</image:caption>
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